Detailed information of SNP:
|
SNP ID:
sf0220137919(Gbrowse)
Chromosome: chr02 Position: 20137919 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.39% | 40.61% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220137919 | C->T | LOC_Os02g33760(LOC_Os02g33760.1) | INTRON |