Detailed information of SNP:
|
SNP ID:
sf0220152183(Gbrowse)
Chromosome: chr02 Position: 20152183 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.39% | 39.61% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220152183 | T->G | LOC_Os02g33790(LOC_Os02g33790.1) | INTRON |