Detailed information of SNP:
|
SNP ID:
sf0220163702(Gbrowse)
Chromosome: chr02 Position: 20163702 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.53% | 44.47% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220163702 | G->A | INTERGENIC | None |