Detailed information of SNP:
|
SNP ID:
sf0220163945(Gbrowse)
Chromosome: chr02 Position: 20163945 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.88% | 44.12% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220163945 | T->C | LOC_Os02g33830(LOC_Os02g33830.1) | Non-Synonymous SNP |