Detailed information of SNP:
|
SNP ID:
sf0220176949(Gbrowse)
Chromosome: chr02 Position: 20176949 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 92.74% | 7.26% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 496 | 88.10% | 11.90% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220176949 | T->C | LOC_Os02g33860(LOC_Os02g33860.1) | INTRON |