Detailed information of SNP:
|
SNP ID:
sf0220181257(Gbrowse)
Chromosome: chr02 Position: 20181257 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 94.81% | 5.19% |
| All Indica | 769 | 99.09% | 0.91% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 355 | 98.87% | 1.13% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 202 | 99.50% | 0.50% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220181257 | A->G | LOC_Os02g33870(LOC_Os02g33870.1) | INTRON |