Detailed information of SNP:
|
SNP ID:
sf0220182554(Gbrowse)
Chromosome: chr02 Position: 20182554 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.53% | 7.47% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220182554 | T->C | LOC_Os02g33870(LOC_Os02g33870.1) | Non-Synonymous SNP |