Detailed information of SNP:
|
SNP ID:
sf0220220096(Gbrowse)
Chromosome: chr02 Position: 20220096 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 97.09% | 2.91% |
| All Indica | 791 | 95.45% | 4.55% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220220096 | G->T | INTERGENIC | None |