Detailed information of SNP:
|
SNP ID:
sf0220234558(Gbrowse)
Chromosome: chr02 Position: 20234558 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.61% | 9.39% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 494 | 81.17% | 18.83% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 79.28% | 20.72% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220234558 | G->A | LOC_Os02g33960(LOC_Os02g33960.1) | INTRON |