Detailed information of SNP:
|
SNP ID:
sf0220253948(Gbrowse)
Chromosome: chr02 Position: 20253948 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1273 | 80.05% | 19.95% |
| All Indica | 781 | 99.36% | 0.64% |
| All Japonica | 372 | 35.75% | 64.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 99.16% | 0.84% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 250 | 37.60% | 62.40% |
| Tropical Japonica | 71 | 29.58% | 70.42% |
| Japonica Intermediate | 51 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220253948 | A->G | INTERGENIC | None |