Detailed information of SNP:
|
SNP ID:
sf0220262765(Gbrowse)
Chromosome: chr02 Position: 20262765 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1226 | 87.03% | 12.97% |
| All Indica | 615 | 75.28% | 24.72% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 304 | 79.61% | 20.39% |
| Indica II | 146 | 71.23% | 28.77% |
| Indica Intermediate | 165 | 70.91% | 29.09% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220262765 | T->C | INTERGENIC | None |