Detailed information of SNP:
|
SNP ID:
sf0220263662(Gbrowse)
Chromosome: chr02 Position: 20263662 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 89.35% | 10.65% |
| All Indica | 651 | 80.34% | 19.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 273 | 78.02% | 21.98% |
| Indica II | 198 | 83.84% | 16.16% |
| Indica Intermediate | 180 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220263662 | C->T | INTERGENIC | None |