Detailed information of SNP:
|
SNP ID:
sf0220273404(Gbrowse)
Chromosome: chr02 Position: 20273404 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.02% | 38.98% |
| All Indica | 796 | 41.33% | 58.67% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 57.22% | 42.78% |
| Indica II | 212 | 19.34% | 80.66% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220273404 | G->A | INTERGENIC | None |