Detailed information of SNP:
|
SNP ID:
sf0220281300(Gbrowse)
Chromosome: chr02 Position: 20281300 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 78.74% | 21.26% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 483 | 44.72% | 55.28% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 42.99% | 57.01% |
| Tropical Japonica | 90 | 54.44% | 45.56% |
| Japonica Intermediate | 65 | 40.00% | 60.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220281300 | T->C | INTERGENIC | None |