Detailed information of SNP:
|
SNP ID:
sf0220320820(Gbrowse)
Chromosome: chr02 Position: 20320820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.50% | 22.50% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 41.19% | 58.81% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220320820 | C->T | LOC_Os02g34030(LOC_Os02g34030.1) | Non-Synonymous SNP |