Detailed information of SNP:
|
SNP ID:
sf0220324301(Gbrowse)
Chromosome: chr02 Position: 20324301 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 98.27% | 1.73% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 414 | 94.93% | 5.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 278 | 92.45% | 7.55% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220324301 | A->G | INTERGENIC | None |