Detailed information of SNP:
|
SNP ID:
sf0220331906(Gbrowse)
Chromosome: chr02 Position: 20331906 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.13% | 40.87% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220331906 | C->T | INTERGENIC | None |