Detailed information of SNP:
|
SNP ID:
sf0220334337(Gbrowse)
Chromosome: chr02 Position: 20334337 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 60.66% | 39.34% |
| All Indica | 673 | 76.08% | 23.92% |
| All Japonica | 492 | 36.18% | 63.82% |
| Aus | 54 | 72.22% | 27.78% |
| Indica I | 320 | 80.31% | 19.69% |
| Indica II | 176 | 68.18% | 31.82% |
| Indica Intermediate | 177 | 76.27% | 23.73% |
| Temperate Japonica | 333 | 27.33% | 72.67% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220334337 | A->G | LOC_Os02g34040(LOC_Os02g34040.1) | Synonymous |