Detailed information of SNP:
|
SNP ID:
sf0220336816(Gbrowse)
Chromosome: chr02 Position: 20336816 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220336816 | G->A | LOC_Os02g34040(LOC_Os02g34040.1) | Synonymous |