Detailed information of SNP:
|
SNP ID:
sf0220352827(Gbrowse)
Chromosome: chr02 Position: 20352827 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 87.41% | 12.59% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 69.92% | 30.08% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220352827 | G->A | INTERGENIC | None |