Detailed information of SNP:
|
SNP ID:
sf0220355816(Gbrowse)
Chromosome: chr02 Position: 20355816 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.76% | 21.24% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220355816 | C->T | INTERGENIC | None |