Detailed information of SNP:
|
SNP ID:
sf0220362806(Gbrowse)
Chromosome: chr02 Position: 20362806 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 83.29% | 16.71% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 60.20% | 39.80% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 88 | 4.55% | 95.45% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220362806 | C->T | INTERGENIC | None |