Detailed information of SNP:
|
SNP ID:
sf0220400235(Gbrowse)
Chromosome: chr02 Position: 20400235 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 91.99% | 8.01% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220400235 | C->A | INTERGENIC | None |