Detailed information of SNP:
|
SNP ID:
sf0220402685(Gbrowse)
Chromosome: chr02 Position: 20402685 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.89% | 39.11% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220402685 | C->T | LOC_Os02g34120(LOC_Os02g34120.1) | Non-Synonymous SNP |