Detailed information of SNP:
|
SNP ID:
sf0220409577(Gbrowse)
Chromosome: chr02 Position: 20409577 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.83% | 3.17% |
| All Indica | 769 | 95.06% | 4.94% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 96.95% | 3.05% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 199 | 91.46% | 8.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220409577 | C->T | LOC_Os02g34130(LOC_Os02g34130.1) | Non-Synonymous SNP |