Detailed information of SNP:
|
SNP ID:
sf0220426703(Gbrowse)
Chromosome: chr02 Position: 20426703 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 67.29% | 32.71% |
| All Indica | 781 | 87.20% | 12.80% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 84.51% | 15.49% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220426703 | A->G | LOC_Os02g34160(LOC_Os02g34160.1) | Non-Synonymous SNP |