Detailed information of SNP:
|
SNP ID:
sf0220451256(Gbrowse)
Chromosome: chr02 Position: 20451256 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.47% | 13.53% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220451256 | G->A | INTERGENIC | None |