Detailed information of SNP:
|
SNP ID:
sf0220455146(Gbrowse)
Chromosome: chr02 Position: 20455146 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 59.56% | 40.44% |
| All Indica | 778 | 35.86% | 64.14% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 363 | 39.94% | 60.06% |
| Indica II | 209 | 31.10% | 68.90% |
| Indica Intermediate | 206 | 33.50% | 66.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220455146 | A->G | LOC_Os02g34200(LOC_Os02g34200.1) | Synonymous |