Detailed information of SNP:
|
SNP ID:
sf0220473630(Gbrowse)
Chromosome: chr02 Position: 20473630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 87.99% | 12.01% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 486 | 74.07% | 25.93% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 85.89% | 14.11% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 64 | 40.62% | 59.38% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220473630 | A->G | INTERGENIC | None |