Detailed information of SNP:
|
SNP ID:
sf0220490530(Gbrowse)
Chromosome: chr02 Position: 20490530 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1259 | 58.70% | 41.30% |
| All Indica | 689 | 29.17% | 70.83% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 26 | 50.00% | 50.00% |
| Indica I | 351 | 15.38% | 84.62% |
| Indica II | 158 | 50.63% | 49.37% |
| Indica Intermediate | 180 | 37.22% | 62.78% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220490530 | A->T | INTERGENIC | None |