Detailed information of SNP:
|
SNP ID:
sf0220521620(Gbrowse)
Chromosome: chr02 Position: 20521620 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1188 | 90.32% | 9.68% |
| All Indica | 577 | 81.28% | 18.72% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 227 | 78.41% | 21.59% |
| Indica II | 190 | 90.53% | 9.47% |
| Indica Intermediate | 160 | 74.38% | 25.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220521620 | C->A | INTERGENIC | None |