Detailed information of SNP:
|
SNP ID:
sf0220545146(Gbrowse)
Chromosome: chr02 Position: 20545146 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.50% | 38.50% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220545146 | C->T | LOC_Os02g34350(LOC_Os02g34350.1) | Synonymous |