Detailed information of SNP:
|
SNP ID:
sf0220710270(Gbrowse)
Chromosome: chr02 Position: 20710270 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 89.87% | 10.13% |
| All Indica | 772 | 89.90% | 10.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 202 | 72.28% | 27.72% |
| Indica Intermediate | 198 | 93.43% | 6.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220710270 | T->G | INTERGENIC | None |