Detailed information of SNP:
|
SNP ID:
sf0220714709(Gbrowse)
Chromosome: chr02 Position: 20714709 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.13% | 48.87% |
| All Indica | 798 | 16.92% | 83.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 6.68% | 93.32% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220714709 | A->T | LOC_Os02g34560(LOC_Os02g34560.1) | INTRON |
| sf0220714709 | A->T | LOC_Os02g34560(LOC_Os02g34560.2) | INTRON |