Detailed information of SNP:
|
SNP ID:
sf0220721808(Gbrowse)
Chromosome: chr02 Position: 20721808 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 92.78% | 7.22% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 490 | 81.84% | 18.16% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 80.18% | 19.82% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220721808 | C->T | INTERGENIC | None |