Detailed information of SNP:
SNP ID:
sf0220728222(Gbrowse)
Chromosome: chr02 Position: 20728222 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 97.81% | 2.19% |
All Indica | 798 | 100.00% | 0.00% |
All Japonica | 497 | 94.57% | 5.43% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 212 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 95.82% | 4.18% |
Tropical Japonica | 94 | 87.23% | 12.77% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0220728222 | C->T | LOC_Os02g34580(LOC_Os02g34580.1) | SNPs that introduce initiation codons |