Detailed information of SNP:
|
SNP ID:
sf0220752375(Gbrowse)
Chromosome: chr02 Position: 20752375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 76.94% | 23.06% |
| All Indica | 794 | 61.59% | 38.41% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220752375 | G->A | INTERGENIC | None |