Detailed information of SNP:



SNP ID: sf0220752375(Gbrowse)

Chromosome: chr02

Position: 20752375
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1414 76.94% 23.06%
All Indica794 61.59% 38.41%
All Japonica497 98.99% 1.01%
Aus67 83.58% 16.42%
Indica I372 72.85% 27.15%
Indica II212 60.85% 39.15%
Indica Intermediate210 42.38% 57.62%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0220752375 G->A INTERGENIC None