Detailed information of SNP:
|
SNP ID:
sf0220753133(Gbrowse)
Chromosome: chr02 Position: 20753133 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 77.46% | 22.54% |
| All Indica | 795 | 62.14% | 37.86% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220753133 | C->T | INTERGENIC | None |