Detailed information of SNP:
|
SNP ID:
sf0220773481(Gbrowse)
Chromosome: chr02 Position: 20773481 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 74.96% | 25.04% |
| All Indica | 759 | 64.43% | 35.57% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 353 | 75.64% | 24.36% |
| Indica II | 203 | 51.23% | 48.77% |
| Indica Intermediate | 203 | 58.13% | 41.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220773481 | T->C | INTERGENIC | None |