Detailed information of SNP:
|
SNP ID:
sf0220775056(Gbrowse)
Chromosome: chr02 Position: 20775056 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 95.27% | 4.73% |
| All Indica | 672 | 91.96% | 8.04% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 272 | 94.12% | 5.88% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 194 | 89.69% | 10.31% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220775056 | G->A | INTERGENIC | None |