Detailed information of SNP:
|
SNP ID:
sf0220784661(Gbrowse)
Chromosome: chr02 Position: 20784661 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 97.15% | 2.85% |
| All Indica | 791 | 97.85% | 2.15% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 93.72% | 6.28% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220784661 | A->T | INTERGENIC | None |