Detailed information of SNP:
|
SNP ID:
sf0220790176(Gbrowse)
Chromosome: chr02 Position: 20790176 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.21% | 49.79% |
| All Indica | 796 | 15.20% | 84.80% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 6.15% | 93.85% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 209 | 11.48% | 88.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220790176 | G->A | LOC_Os02g34670(LOC_Os02g34670.1) | Non-Synonymous SNP |