Detailed information of SNP:
|
SNP ID:
sf0220790882(Gbrowse)
Chromosome: chr02 Position: 20790882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 92.85% | 7.15% |
| All Indica | 795 | 92.83% | 7.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220790882 | C->T | LOC_Os02g34670(LOC_Os02g34670.1) | Non-Synonymous SNP |