Detailed information of SNP:
|
SNP ID:
sf0220800822(Gbrowse)
Chromosome: chr02 Position: 20800822 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220800822 | C->T | INTERGENIC | None |