Detailed information of SNP:
|
SNP ID:
sf0220817624(Gbrowse)
Chromosome: chr02 Position: 20817624 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220817624 | C->A | LOC_Os02g34710(LOC_Os02g34710.1) | UTR_3_PRIME |