Detailed information of SNP:
|
SNP ID:
sf0220828673(Gbrowse)
Chromosome: chr02 Position: 20828673 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 96.17% | 3.83% |
| All Indica | 763 | 93.58% | 6.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 93.41% | 6.59% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 188 | 93.62% | 6.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220828673 | C->T | LOC_Os02g34730(LOC_Os02g34730.1) | INTRON |