Detailed information of SNP:
|
SNP ID:
sf0220843934(Gbrowse)
Chromosome: chr02 Position: 20843934 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.68% | 6.32% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 489 | 83.84% | 16.16% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 80.73% | 19.27% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220843934 | C->T | LOC_Os02g34770(LOC_Os02g34770.1) | Non-Synonymous SNP |