Detailed information of SNP:



SNP ID: sf0220843934(Gbrowse)

Chromosome: chr02

Position: 20843934
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1409 93.68% 6.32%
All Indica799 99.50% 0.50%
All Japonica489 83.84% 16.16%
Aus66 93.94% 6.06%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica327 80.73% 19.27%
Tropical Japonica94 88.30% 11.70%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0220843934 C->T LOC_Os02g34770(LOC_Os02g34770.1) Non-Synonymous SNP