Detailed information of SNP:
|
SNP ID:
sf0220848352(Gbrowse)
Chromosome: chr02 Position: 20848352 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.39% | 8.61% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220848352 | A->G | INTERGENIC | None |