Detailed information of SNP:
|
SNP ID:
sf0220849311(Gbrowse)
Chromosome: chr02 Position: 20849311 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220849311 | C->T | INTERGENIC | None |