Detailed information of SNP:
|
SNP ID:
sf0220853369(Gbrowse)
Chromosome: chr02 Position: 20853369 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220853369 | C->A | LOC_Os02g34790(LOC_Os02g34790.1) | Non-Synonymous SNP |